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Stephen J. O'Brien, Ph.D
Office of the Chief
Laboratory of Genomic Diversity

 
 

Publications   Page   [1]   [2]    [3]   [4]   [5]

 
Ishida Y, David VA, Eizirik E, Schaffer AA, Neelam BA, Roelke ME, Hannah SS, O'Brien SJ, Menotti-Raymond M . A homozygous single-base deletion in MLPH causes the dilute coat color phenotype in the domestic cat. Genomics . 2006. In Press . [Journal]
Roelke ME, Pecon-Slattery J, Taylor S, Citino S, Brown E, Packer C, Vandewoude S, O'Brien SJ . T-lymphocyte profiles in FIV-infected wild lions and pumas reveal CD4 depletion. J. Wildl. Dis. 42: 234-48, 2006. [Journal]
O'Brien SJ, Troyer JL, Roelke M, Marker L, Pecon-Slattery J. Plagues and adaptation: Lessions from the Felidae models for SARS and AIDS. Biological Conservation . 131, Issue 2: 255-265, 2006. In Press . [Journal]
Lind J, Hutcheson-Dilks H, Williams S, Moore J, Essex M, Ruiz-Pesini E, Wallace D, Tishkoff S, O'Brien S, Smith M . Elevated male European and female African contributions to the genomes of African American individuals. Hum Genet . 2006. In Press . [Journal]
Qi Y, Martin M, Gao X, Jacobson L, Goedert J, Buchbinder S, Kirk G, O'Brien S, Trowsdale J, Carrington M .
KIR/HLA Pleiotropism: Protection against both HIV and Opportunistic Infections. PLoS Pathog. 2006. In Press . [Journal]
Javanbakht H, An P, Gold B, Peterson D, O'hUigin C, Nelson G, O'Brien S, Kirk G, Detels R, Buchbinder S, Donfield S, Shulenin S, Song B, Perron M, Stremlau M, Sodroski J, Dean M, Winkler C . Effects of human TRIM5a1pha polymorphisms on antiretroviral function and susceptibility to human immunodeficiency virus infection. Virology . 354(1): 15-27, 2006. [Journal]
Guo X, Scott K, Liu Y, Dean M, David V, Nelson G, Johnson R, Dilks H, Lautenberger J, Kessing B, Martenson J, Guan L, Sun S, Deng H, Zheng Y, de The G, Liao J, Zeng Y, O'Brien S, Winkler C . Genetic factors leading to chronic Epstein-Barr virus infection and nasopharyngeal carcinoma in South East China: study design, methods and feasibility. Hum Genomics. 2(6): 365-75, 2006. [Journal]
Guo X, O'Brien S, Winkler C, Scott K, Hutcheson H, David V, Kessing B, Zheng Y, Liao J, Lui Y, Guy de T, Zeng Y . Association study of chromosome 4 STRs polymorphisms with nasopharyngeal carcinoma. Yi Chuan . 28(7): 783-90. Chinese, 2006. [Journal]
Bashirova A, Bleiber G, Qi Y, Hutcheson H, Yamashita T, Johnson R, Cheng J, Alter G, Goedert J, Buchbinder S, Hoots K, Vlahov D, May M, Maldarelli F, Jacobson L, O'Brien S, Telenti A, Carrington M . Consistent effects of TSG101 genetic variability on multiple outcomes of exposure to human immunodeficiency virus type 1. J Virol. 80(14): 6757-63, 2006. [Journal]
Kim J, Antunes A, Luo S, Menninger J, Nash WG, O'Brien SJ, Johnson WE . Evolutionary analysis of a large mtDNA translocation (numt) into the nuclear genome of the Panthera genus species. Gene . 366(2):: 292-302, 2006. [Journal]
Schmidt-Küntzel A, Eizirik E, O'Brien SJ, Menotti-Raymond M . Tyrosinase and Tyrosinase Related Protein 1 Alleles Specify Domestic Cat Coat Color Phenotypes of the albino and brown Loci. J. Hered . 289-301, 2005. [Journal]
Oleksyk TK, Thio CL, Truelove AL, Goedert JJ, Donfield SM, Kirk GD, Thomas DL, O'Brien SJ, Smith MW .
Single nucleotide polymorphisms and haplotypes in the IL10 region associated with HCV clearance. Genes Immun . 6: 347-57, 2005. [Journal]
Duggal P, Winkler CA, An P, Yu XF, Farzadegan H, O'Brien SJ, Beaty TH, Vlahov D . The effect of RANTES chemokine genetic variants on early HIV-1 plasma RNA among African American injection drug users. J Acquir Immune Defic Syndr . 38: 584-9, 2005. [Journal]
De La Vega FM, Isaac H, Collins A, Scafe CR, Halldórsson BV, Su X, Lippert RA, Wang Y, Laig-Webster M, Koehler RT, Ziegle JS, Wogan LT, Stevens JF, Leinen KM, Olson SJ, Guegler KJ, You X, Xu LH, Hemken HG, Kalush F, Itakura M, Zheng Y, de Thé G, O'Brien SJ, Clark AG, Istrail S, Hunkapiller MW, Spier EG, Gilbert DA . The linkage disequilibrium maps of three human chromosomes across four populations reflect their demographic history and a common underlying recombination pattern. Genome Res . 15: 454-62, 2005. [Journal]
Roca AL, Nash WG, Menninger JC, Murphy WJ, O'Brien SJ . Insertional polymorphisms of endogenous feline leukemia viruses. J Virol . 79: 3979-86, 2005. [Journal]
Teeling EC, Springer MS, Madsen O, Bates P, O'brien SJ, Murphy WJ . A molecular phylogeny for bats illuminates biogeography and the fossil record. Science . 307: 580-4, 2005. [Journal]
Beck TW, Menninger J, Murphy WJ, Nash WG, O'brien SJ, Yuhki N . The feline major histocompatibility complex is rearranged by an inversion with a breakpoint in the distal class I region. Immunogenetics . 56: 702-9, 2005. [Journal]
Roca AL, Georgiadis N, O'Brien SJ . Cytonuclear genomic dissociation in African elephant species. Nat Genet . 37: 96-100, 2005. [Journal]
Troyer JL, Pecon-Slattery J, Roelke ME, Johnson W, VandeWoude S, Vazquez-Salat N, Brown M, Frank L, Woodroffe R, Winterbach C, Winterbach H, Hemson G, Bush M, Alexander KA, Revilla E, O'Brien SJ . Seroprevalence and Genomic Divergence of Circulating Strains of Feline Immunodeficiency Virus among Felidae and Hyaenidae Species. J. Virol . 79: 8282-94, 2005. [Journal]
He Q, Lowrie C, Shelton GD, Castellani RJ, Menotti-Raymond M, Murphy W, O'Brien SJ, Swanson WF, Fyfe JC . Inherited motor neuron disease in domestic cats: a model of spinal muscular atrophy. Pediatr. Res . 57: 324-30, 2005. [Journal]