Menotti-Raymond, M., David, V.A., Chen, Z.Q., Menotti, K.A., Sun, S., Schäffer, A.A., Tomlin, J.F., Agarwala, R., O'Brien, S.J., and Murphy, W.J. Second generation integrated genetic linkage /radiation hybrid maps of the domestic cat. J Hered 94(1): 95-106, 2003.

Eizirik, E., Yuhki, N., Johnson, W.E., Menotti-Raymond, M., Hannah, S., and O’Brien, S.J. Direct molecular evidence for multiple origins of melanism in the cat family (Mammalia, Felidae). Curr Biol 13: 448-453, 2003.

Eizirik, E., Yuhki, N., Johnson, W.E., Menotti-Raymond, M., Hannah, S.S. and O'Brien, S.J. Molecular genetics and evolution of melanism in the cat family. Current Biology 3: 448-453, 2003.

Menotti-Raymond, M., David, V. A., Stephens, R., Agarwala, R., Schaffer, A., O'Brien, S. J., and W. J. Murphy. 2003. Radiation hybrid mapping of 304 novel microsatellites in the domestic cat genome. Cytogenetics and Genome Research. 102:272-276 (cat_maps.pdf)

Butler, J.M., David, V.A. and Menotti-Raymond, M.: The "MeowPlex": A new DNA test using tetranucleotide STR markers for the domestic cat. Profiles in DNA 5(2): 7-10, 2002.

Driscoll, C.A., Menotti-Raymond, M., Nelson, G., Goldstein, D. and O'Brien, S.J.: Genomic microsatellites as evolutionary chronometers: A test in wild cats . Genome Research 12: 414-423, 2002.

O'Brien, S.J., Menotti-Raymond, M., Murphy, W.J. and Yuhki, N.: The feline genome project. Annual Reviews of Genetics 36: 657-686, 2002.

Eizirik E, Kim JH, Menotti-Raymond M,Crawshaw PG Jr, O'Brien SJ, Johnson WE.  2001.  Phylogeography, population, history and conservation genetics of jaguars. (Panthera onca, Mammalia, Felidae) .  Molecular Ecology   10: 65-79.   Additional Data:   Pon Final Data Set Panthera onca STR Data

Culver, M., Menotti-Raymond, M.M. and O'Brien, S.J.: Patterns of size homoplasy at ten microsatellite loci in pumas (Puma concolor). Mol. Biol. Evol. 18: 1151-1156, 2001.

Eizirik, E., Kim, J.H., Menotti-Raymond, M., Crawshaw, P.G., O'Brien, S.J. and Johnson, W.E.: Phylogeography, population history and conservation genetics of jaguars (Panthera onca) . Mol. Ecol. 10: 65-79, 2001.

Sun, S., Murphy, W.J., Menotti-Raymond, M. and O'Brien, S.J.: Integration of the feline radiation hybrid and linkage maps . Mammalian Genome 12: 436-441, 2001.

Lu, Z., Johnson, W.E., Menotti-Raymond, M., Yuhki, N., Martenson, J., Mainka, S., Shiqiang, H., Qingguo, Z., Zhihe, Z., Li, G., Pan, W. and O'Brien, S.J.: Patterns of genetic variation in remaining giant panda (Ailuropoda melanoleuca) populations. Conservation Biology 15: 1596-1607, 2001.

Murphy, W. J., Sun, S., Chen, Z., Yuhki, N., Hirschmann, D., Menotti-Raymond, M. and O'Brien, S. J., A Feline Radiation Hybrid Map and its Implications for Comparative Mapping. Genome Res. (5):691-702, 2000. 

O'Brien, S. J., et al. Comparative Genomics. Mammalian Radiation. Genome Maps X. Science, 286, Suppl., 1999.

O'Brien, S. J., Menotti-Raymond, M., Murphy, W. J., Nash, W. G., Wienberg, J., Stanyon, R., Copeland, N. G., Jenkins, N. A., Womack, J. E., and Graves, J. A. M., The Promise of Comparative Genomics in Mammals. Science 286:458-481, 1999. 

Johnson, W. E., Slattery, J. P., Eizirik, E., Kim, J., Menotti-Raymond, M., Bonacic, C., Cambre, R., Crawshaw Jr., P. G., Nunes, A. V., Seuanez, H., Moreira, M. A., Seymour, K. L. , Simon, F., Swanson, W. and O'Brien, S. J., Disparate Phylogeographic Patterns of Molecular Genetic Variation in Four Closely Related South American Small Cat Species. Molecular Ecology 8(12 Suppl 1):S79-94, 1999.  

Menotti-Raymond, M., David, V.A., Lyons, L. A., Schäffer, A. A., Tomlin, J. F. and O'Brien, S. J., A Genetic Linkage Map of Microsatellites in the Domestic Cat (Felis catus). Genomics 57, 9-23, 1999.

Murphy, W. J., Menotti-Raymond, M., Lyons, L. A., Thompson, M. E. and O'Brien, S. J., Development of a Feline Whole-Genome Radiation Hybrid Panel and Comparative Mapping of Human Chromosome 12 and 22 Loci. Genomics 57, 1-8, 1999.

Johnson, W.E., J. Pecon Slattery, E. Eizirik, J. Kim, M. Menotti Raymond, C. Bonacic, R. Cambre, P. Crawshaw, A. Nunes, H. Seuanez, M. A. Moreira, K. L. Seymour, F. Simon, W. Swanson, and S.J. O'Brien.  1999. Disparate phylogeographic patterns of mitochondrial DNA variation in four closely related South American small cat species .  Molecular Ecology . 8:S79-S94. 

Johnson, W. E., Shinyashiku, F., Menotti-Raymond, M., Driscoll, C., Leh, C., Sunquist, M., Johnston, L., Bush, M., Wildt, D., Yuhki, N. and O'Brien, S. J., Molecular Genetic Characterization of Two Insular Asian Cat Species, Bornean Bay Cat and Iriomote Cat. Evolutionary Theory and Processes: Modern Perspectives (S.P Wasser ed.)i> Klewar Academic Publishers, pp. 223-248, 1999.