Troyer, J.L, Pecon-Slattery, J, Roelke, M.E. et al. : (2005) Seroprevalence and Genomic Divergence of circulating strains of feline immunodeficiency virus (FIV) among Felidae and Hyaenidae species. J. Virol., 79:8282-94. [ PDF ]

Pearks Wilkerson A.J., Teeling, E., Troyer J., Bar-Gal, G.K., Roelke-Parker, M.E., Pecon-Slattery, J. and O'Brien, S.J. : ( 2004) SARS-related coronovirus outbreak in cheetahs: a cautionary tale. Curr. Biol, 14:R227-8. [ PDF ]

Troyer J.L., Pecon-Slattery J., Roelke M.E., Black, L. Packer, C., and O'Brien S.J.: (2004) Patterns of FIV-Ple multiple infection and genome divergence in a natural population of African lions. J. Virol., 78:3777-9. [ PDF ]

Roca A.L., Pecon-Slattery, J, and O'Brien S.J.: (2004) Genomically intact endogenous feline leukemia viruses of recent origin. J. Virol., 78:4370-5 . [ PDF ]

Pecon-Slattery, J., Pearks Wilkerson, A. J., Murphy, W. J., and S.J. O'Brien.: (2004) Phylogenetic assessment of introns and SINEs within the Y-chromosome using the cat family Felidae as a species tree. Mol Biol Evol., 21:2299-309. [ PDF ]

Pecon-Slattery, J. Lee, T-H, DeVita, D., O'Brien S.J., and Murphy, E.L.: ( 2003) Correlations between proviral HTLV-2 genetic diversity and patient susceptibility to pneumonia. AIDS Res. And Human Retroviruses, Supplement 19: S36. 

Comstock K.E., Georgiadis, N. Pecon-Slattery, J., Roca, A.L., Ostrander E.A., O'Brien, S.J. and Wasser, S.K.: (2002) Patterns of molecular variation among African elephant populations.Mol Ecol, 11:2489-98. 
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Roca, A.L. Georgiadis , N., Pecon-Slattery, J. and O'Brien, S.J.: (2001) Genetic evidence for two species of elephant in Africa . Science, 293:1473-1477. [ PDF ]

Pecon-Slattery, J., Sanner-Wachter, L. and O'Brien, S.J.: (2000) Novel gene conversion between X-Y homologues located in the nonrecombining region of the Y chromosome in Felidae (Mammalia). Proc Natl Acad Sci USA., 9;97(10):5307-12.

Pecon-Slattery, J., Murphy, W.I. and O'Brien, S.J.: (2000) Patterns of diversity among SINE elements isolated from three Y-chromosome genes in carnivores. Mol Biol Evol., 17(5):825-9. [ PDF ]

Culver, M., Johnson, W.E. and Pecon-Slattery, J., and O'Brien, S.J.: (2000) Genomic ancestry of the American puma (Puma concolor). J Hered., 91(3):186-97. [ PDF ]

Gessain A., Pecon-Slattery, J. Meertens, L., and Mahieux, R.: (2000) Origins of HTLV-1 in South America . Nat Med, 6:232. [ PDF ]

Pecon-Slattery, J., Franchini, G. and Gessain, A.: (1999) Genomic evolution, patterns of global dissemination, and inter-species transmission of human and simian T-cell leukemia/lymphotropic viruses. Genome Res., 9: 525-540.

Rivadeneira, E.D., Ferrari, M.G., Jarrett, R. Markham, P., Birkebak, T., Takemoto, S. , Johnson-Delaney, C., Pecon Slattery, J. and Franchini, G.: (1999) A novel Epstein-Barr virus-like virus, HV(MNE), in a Macaca nemestrina with mycosis fungoides. Blood., 94(6):2090-101.

Murphy, W.J., S. Shan, J. Pecon Slattery, Z.Q. Chen, and S.J. O'Brien.: (1999) Extensive conservation of sex chromosome organization between cat and human revealed by parallel radiation hybrid mapping. Genome Res., (12):1223-30.

McKenzie, L.M., Pecon-Slattery, J., Carrington, M., O'Brien, S. J.: (1999) Taxonomic hierarchy of HLA class I allele sequences. Genes Immun., (2):120-9.

Johnson, W. E., Pecon Slattery, J., Eizirik, E., Bonacic, C., Cambre, R., Crawshaw, P., Nunes, A., Seuanez, H., Seymour, K. L., Simon, F. and O'Brien, S. J.: (1999) Disparate phylogeographic patterns of mitochondrial DNA variation in four closely related South American small cat species. Mol Biol Evol., 8: S79-S94.

PeconSlattery, J. and O'Brien, S.J.: (1998) Patterns of Y and X chromosome DNA sequence divergence during the Felidae radiation. Genetics., 148:1245-1255.

Wentzel, J., Stephens, J. C., Johnson, W.E., Menotti-Raymond, M., Slattery, J.P., Yuhki, N., Carrington, M., Quigley, H., Miquelle, D.G., Tilson, R., Manansang, J., Brady, G., Zhi, L., Wenshi, P., Shi-Quiang, H., Johnston, L., Sunquist, M., Karanth, K.U. and O'Brien, S.J.: (1998) Subspecies of tigers: molecular assessment using "voucher specimens" of geographically traceable individuals. Riding the Tiger: Tiger conservation in human-dominated landscapes, Seidensticker, J., Christie, S. and Jackson, P. (Eds.). Cambridge University Press.

Stephens , J.C. and J. Pecon Slattery, J. (1998) Computational resources for population analyses: In Hoelzel, A.R. (Ed.): Molecular Genetic Analyses of Populations. A Practical Approach.  Oxford University Press., pp. 421-430.

Mahieux, R., Slattery, J. P., Chen, G. M. and Gessain, A. (1998) Evolutionary inferences of novel Simian T. Lymphotropic Virus type 1 from wildcaught chamca (Papio ursinus) and olive baboons (Papio anubis). Virol., 251:71-84. [ PDF ]